1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0622.g079613

Azfi_s0622.g079613


Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking & original description: CDS=1-2034


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0622.g079613
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020544.5 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e011396_P001 Zm00001e011396 DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 476 569
IPR011545 DEAD/DEAH_box_helicase_dom 236 417
No external refs found!