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  5. Azfi_s0557.g076879

Azfi_s0557.g076879 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease *(RNase R) & original description: CDS=154-2526


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0557.g076879
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Ceric.16G035800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.02 OrthoFinder output from all 47 species
Nbi_g16036 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25156 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011986 RNR1,... exoribonuclease *(RNase R) & original description: CDS=1-2217 0.03 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 385 681
No external refs found!