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  5. Azfi_s0551.g076593

Azfi_s0551.g076593


Description : not classified & original description: CDS=64-1935


Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0551.g076593
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT4G34910 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Cre12.g526850 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_38528 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os03g51900.1 LOC_Os03g51900 DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp7g04610.1 No alias DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Solyc02g070100.3.1 Solyc02g070100 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 51 227
IPR001650 Helicase_C 267 416
No external refs found!