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  5. Azfi_s0486.g073429

Azfi_s0486.g073429 (ATPRP40A, PRP40A)


Aliases : ATPRP40A, PRP40A

Description : pre-mRNA-processing protein *(PRP40A/B) & original description: CDS=164-3541


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0486.g073429
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.04 OrthoFinder output from all 47 species
Ala_g02608 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14297 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Cba_g05967 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ceric.06G057100.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G014500.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Cre07.g351000 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dac_g31177 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g33711 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Dde_g04452 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02927 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g29464 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009302001 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Lfl_g04256 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g08148 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
MA_10433850g0010 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.03 OrthoFinder output from all 47 species
Mp2g00410.1 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.02 OrthoFinder output from all 47 species
Ppi_g01375 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Sam_g13746 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Smo402621 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Solyc07g022760.4.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.06 OrthoFinder output from all 47 species
Spa_g09384 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e020778_P001 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
MF GO:0005347 ATP transmembrane transporter activity IEP HCCA
MF GO:0005471 ATP:ADP antiporter activity IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006862 nucleotide transport IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
MF GO:0015215 nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015217 ADP transmembrane transporter activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 202 229
IPR001202 WW_dom 245 270
IPR002713 FF_domain 527 577
IPR002713 FF_domain 598 644
IPR002713 FF_domain 806 854
IPR002713 FF_domain 669 727
No external refs found!