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  5. Azfi_s0449.g070725

Azfi_s0449.g070725


Description : not classified & original description: CDS=208-3285


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0449.g070725
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00025p00230510 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
AMTR_s00028p00237040 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G58060 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT2G01130 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT5G04895 No alias DEA(D/H)-box RNA helicase family protein 0.05 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66407.t1 Aspi01Gene66407 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g21782 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.04 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.04 OrthoFinder output from all 47 species
GSVIVT01023271001 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
GSVIVT01034780001 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g53760.1 LOC_Os03g53760 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Len_g41812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429367g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_177779g0010 No alias DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_22839g0010 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 OrthoFinder output from all 47 species
Ppi_g09359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016669 No alias not classified & original description: CDS=25-1776 0.03 OrthoFinder output from all 47 species
Sam_g14582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g007510.4.1 Solyc04g007510 DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.02 OrthoFinder output from all 47 species
Tin_g02164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0003689 DNA clamp loader activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005663 DNA replication factor C complex IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 699 778
IPR011709 DEAD-box_helicase_OB_fold 857 939
IPR011545 DEAD/DEAH_box_helicase_dom 251 406
IPR001650 Helicase_C 508 635
No external refs found!