Aliases : PBF1
Description : beta-type-6 component *(PBF) of 26S proteasome & original description: CDS=7-888
Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Azfi_s0392.g067771 | |
Cluster | HCCA: Cluster_20 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G60820 | PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases)... | 0.04 | OrthoFinder output from all 47 species | |
Aev_g01998 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g08527 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g00288 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001339.5 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.05 | OrthoFinder output from all 47 species | |
Cre26.g756797 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.06 | OrthoFinder output from all 47 species | |
Dcu_g00884 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01000943001 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01027613001 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.06 | OrthoFinder output from all 47 species | |
Gb_25087 | PBF1 | component beta type-6 of 26S proteasome | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os09g32800.1 | PBF1, LOC_Os09g32800 | component beta type-6 of 26S proteasome | 0.06 | OrthoFinder output from all 47 species | |
Mp1g12450.1 | PBF1 | component beta type-6 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species | |
Msp_g43692 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g43343 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g05780 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c16_16960V3.1 | PBF1, Pp3c16_16960 | N-terminal nucleophile aminohydrolases (Ntn hydrolases)... | 0.03 | OrthoFinder output from all 47 species | |
Smo94273 | PBF1 | Protein degradation.26S proteasome.20S core... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g084920.3.1 | PBF1, Solyc02g084920 | component beta type-6 of 26S proteasome | 0.06 | OrthoFinder output from all 47 species | |
Spa_g13091 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g16539 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g30516 | PBF1 | beta-type-6 component *(PBF) of 26S proteasome &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e010121_P001 | PBF1, Zm00001e010121 | component beta type-6 of 26S proteasome | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005839 | proteasome core complex | IEA | Interproscan |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005739 | mitochondrion | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
BP | GO:0022900 | electron transport chain | IEP | HCCA |
BP | GO:0022904 | respiratory electron transport chain | IEP | HCCA |
BP | GO:0032780 | negative regulation of ATP-dependent activity | IEP | HCCA |
MF | GO:0042030 | ATPase inhibitor activity | IEP | HCCA |
BP | GO:0043462 | regulation of ATP-dependent activity | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044092 | negative regulation of molecular function | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0065009 | regulation of molecular function | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001353 | Proteasome_sua/b | 85 | 280 |
No external refs found! |