1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0373.g067189

Azfi_s0373.g067189


Description : component *(Sm-D3) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: CDS=315-713


Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0373.g067189

Target Alias Description ECC score Gene Family Method Actions
AT1G20580 No alias Small nuclear ribonucleoprotein family protein 0.03 OrthoFinder output from all 47 species
AT1G76300 SmD3 snRNP core protein SMD3 0.03 OrthoFinder output from all 47 species
Aspi01Gene13749.t1 Aspi01Gene13749 component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020912.17 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Cre10.g455300 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
LOC_Os02g01250.1 LOC_Os02g01250 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13760.1 LOC_Os03g13760 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Mp1g11210.1 No alias component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Nbi_g20365 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Pnu_g19523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Sam_g19523 No alias component *(Sm-D3) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Smo112116 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Solyc02g062240.3.1 Solyc02g062240 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species
Solyc02g084020.3.1 Solyc02g084020 component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 11 74
No external refs found!