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  5. Azfi_s0305.g063898

Azfi_s0305.g063898 (CAMTA3, SR1)


Aliases : CAMTA3, SR1

Description : CAMTA-type transcription factor & original description: CDS=146-3301


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0305.g063898
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 CAMTA3, SR1,... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
LOC_Os04g31900.1 LOC_Os04g31900 transcription factor (CAMTA) 0.03 OrthoFinder output from all 47 species
Len_g16770 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08907 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo441667 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.02 OrthoFinder output from all 47 species
Solyc04g056270.4.1 CAMTA3, SR1,... transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Zm00001e037974_P002 CAMTA3, SR1,... transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 891 909
IPR000048 IQ_motif_EF-hand-BS 914 932
IPR005559 CG-1_dom 23 135
IPR002110 Ankyrin_rpt 685 774
No external refs found!