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  5. Azfi_s0293.g063477

Azfi_s0293.g063477 (EMB3011)


Aliases : EMB3011

Description : RNA helicase *(Prp16) & original description: CDS=81-3746


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0293.g063477

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000984.27 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
Cre03.g182950 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
GSVIVT01007911001 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder output from all 47 species
LOC_Os07g32430.1 EMB3011, LOC_Os07g32430 RNA helicase (Prp16) 0.05 OrthoFinder output from all 47 species
Len_g08915 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_629782g0010 EMB3011 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.03 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g079250.3.1 Solyc01g079250 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
Zm00001e010450_P001 EMB3011, Zm00001e010450 RNA helicase (Prp16) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 458 611
IPR001650 Helicase_C 660 786
IPR011709 DEAD-box_helicase_OB_fold 994 1071
IPR007502 Helicase-assoc_dom 849 935
No external refs found!