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  5. Azfi_s0270.g061170

Azfi_s0270.g061170


Description : not classified & original description: CDS=1-2412


Gene families : OG0001264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001264_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0270.g061170
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Adi_g112333 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24124 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11718.t1 Aspi01Gene11718 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z218900.1 Ceric.1Z218900 not classified & original description: pacid=50637330... 0.04 OrthoFinder output from all 47 species
Dac_g16960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g12198 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g04311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09598 No alias PIP/PIPL precursor polypeptide & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 406 455
IPR002885 Pentatricopeptide_repeat 267 316
IPR002885 Pentatricopeptide_repeat 337 386
IPR002885 Pentatricopeptide_repeat 547 595
IPR002885 Pentatricopeptide_repeat 162 211
IPR002885 Pentatricopeptide_repeat 511 540
IPR002885 Pentatricopeptide_repeat 229 261
IPR002885 Pentatricopeptide_repeat 132 160
IPR002885 Pentatricopeptide_repeat 480 506
IPR033443 PPR_long 644 791
No external refs found!