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  5. Azfi_s0252.g060313

Azfi_s0252.g060313 (AtHPR1, AtTHO1, THO1, HPR1)


Aliases : AtHPR1, AtTHO1, THO1, HPR1

Description : component *(THOC1/HPR1) of mRNP trafficking THO subcomplex & original description: CDS=139-2346


Gene families : OG0005828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005828_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0252.g060313
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
Cre16.g695300 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Dcu_g09998 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
LOC_Os03g01970.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.04 OrthoFinder output from all 47 species
Len_g14477 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Pnu_g11959 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Sam_g15781 No alias component *(THOC1/HPR1) of mRNP trafficking THO... 0.02 OrthoFinder output from all 47 species
Smo96989 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043647 inositol phosphate metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046164 alcohol catabolic process IEP HCCA
BP GO:0046174 polyol catabolic process IEP HCCA
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP HCCA
BP GO:0046855 inositol phosphate dephosphorylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071545 inositol phosphate catabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 122 578
No external refs found!