1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0238.g059627

Azfi_s0238.g059627 (BRCA2(V), BRCA2B, ATBRCA2(V))


Aliases : BRCA2(V), BRCA2B, ATBRCA2(V)

Description : component *(BRCA2) of regulatory BRCC deubiquination complex & original description: CDS=1-5148


Gene families : OG0007523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007523_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0238.g059627
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00030650 BRCA2(V),... DNA damage response.BRCC DNA-damage response... 0.08 OrthoFinder output from all 47 species
AT4G00020 EDA20,... BREAST CANCER 2 like 2A 0.06 OrthoFinder output from all 47 species
Aop_g25648 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.03 OrthoFinder output from all 47 species
Ceric.07G096700.1 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.03 OrthoFinder output from all 47 species
GSVIVT01030280001 BRCA2(V),... DNA damage response.BRCC DNA-damage response... 0.09 OrthoFinder output from all 47 species
Gb_10450 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2) 0.08 OrthoFinder output from all 47 species
LOC_Os01g07110.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.04 OrthoFinder output from all 47 species
Solyc02g050200.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.06 OrthoFinder output from all 47 species
Solyc02g050210.2.1 BRCA2(V),... DMC1-recombinase recruitment protein (BRCA2). component... 0.04 OrthoFinder output from all 47 species
Tin_g11489 BRCA2(V),... component *(BRCA2) of regulatory BRCC deubiquination... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015252 BRCA2_hlx 1104 1175
IPR015187 BRCA2_OB_1 1179 1307
IPR002093 BRCA2_repeat 705 729
IPR002093 BRCA2_repeat 788 813
IPR002093 BRCA2_repeat 300 326
IPR002093 BRCA2_repeat 221 242
No external refs found!