Azfi_s0226.g059002 (ICU2)

Aliases : ICU2

Description : catalytic component *(POLA1) of DNA polymerase alpha complex & original description: CDS=200-4921

Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0226.g059002
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00221560	ICU2,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	OrthoFinder output from all 47 species
AT5G67100	ICU2	DNA-directed DNA polymerases	0.1	OrthoFinder output from all 47 species
Als_g33916	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
Aop_g08265	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Aspi01Gene70874.t1	ICU2, Aspi01Gene70874	catalytic component *(POLA1) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Ceric.09G047200.1	ICU2, Ceric.09G047200	catalytic component *(POLA1) of DNA polymerase alpha...	0.13	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000237.42	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.04	OrthoFinder output from all 47 species
Cre04.g214350	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.08	OrthoFinder output from all 47 species
Dac_g30890	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.04	OrthoFinder output from all 47 species
Dcu_g12848	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.12	OrthoFinder output from all 47 species
GSVIVT01022113001	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.12	OrthoFinder output from all 47 species
Gb_26053	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.12	OrthoFinder output from all 47 species
Gb_26055	ICU2	DNA polymerase alpha catalytic subunit OS=Oryza sativa...	0.11	OrthoFinder output from all 47 species
LOC_Os01g64820.1	ICU2, LOC_Os01g64820	catalytic component POLA1 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species
Len_g55945	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.13	OrthoFinder output from all 47 species
MA_10427959g0010	ICU2	DNA polymerase alpha catalytic subunit OS=Arabidopsis...	0.13	OrthoFinder output from all 47 species
MA_242082g0010	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.12	OrthoFinder output from all 47 species
MA_3471g0020	ICU2	DNA polymerase alpha catalytic subunit OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
Mp7g03960.1	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.09	OrthoFinder output from all 47 species
Msp_g14735	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Nbi_g01498	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.09	OrthoFinder output from all 47 species
Sam_g08423	No alias	catalytic component *(POLA1) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Smo232193	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.03	OrthoFinder output from all 47 species
Solyc02g093300.3.1	ICU2, Solyc02g093300	catalytic component POLA1 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species
Spa_g09409	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Tin_g01298	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.12	OrthoFinder output from all 47 species
Zm00001e019156_P001	ICU2, Zm00001e019156	catalytic component POLA1 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015088	Znf_DNA-dir_DNA_pol_B_alpha	1353	1568
IPR006133	DNA-dir_DNA_pol_B_exonuc	411	789
IPR024647	DNA_pol_a_cat_su_N	30	98
IPR006134	DNA-dir_DNA_pol_B_multi_dom	855	1312

External Links

No external refs found!

Azfi_s0226.g059002 (ICU2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation