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  5. Azfi_s0210.g058076

Azfi_s0210.g058076


Description : core component *(GAR1) of H/ACA snoRNP RNA pseudouridylation complex & original description: CDS=226-837


Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0210.g058076

Target Alias Description ECC score Gene Family Method Actions
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000310.30 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.01 OrthoFinder output from all 47 species
Cre13.g567850 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.01 OrthoFinder output from all 47 species
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.02 OrthoFinder output from all 47 species
Pp3c5_28430V3.1 Pp3c5_28430 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011917 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Sam_g01576 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.06 OrthoFinder output from all 47 species
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Solyc10g078540.3.1 Solyc10g078540 core component Gar1 of H/ACA small nucleolar... 0.07 OrthoFinder output from all 47 species
Zm00001e024449_P002 Zm00001e024449 core component Gar1 of H/ACA small nucleolar... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA

No InterPro domains available for this sequence

No external refs found!