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  5. Azfi_s0198.g057411

Azfi_s0198.g057411


Description : RNA editing factor *(OZ) & original description: CDS=1-3054


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0198.g057411
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00058310 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Aop_g12366 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25497 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_05351 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_38905 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_10434973g0010 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
MA_854125g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.02 OrthoFinder output from all 47 species
Ppi_g55843 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Solyc10g007440.3.1 Solyc10g007440 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 537 564
IPR001876 Znf_RanBP2 580 603
IPR001876 Znf_RanBP2 496 524
No external refs found!