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  5. Azfi_s0188.g056788

Azfi_s0188.g056788


Description : not classified & original description: CDS=169-2181


Gene families : OG0006308 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0188.g056788
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT5G50310 No alias Galactose oxidase/kelch repeat superfamily protein 0.05 OrthoFinder output from all 47 species
Aob_g22687 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z187100.1 Ceric.1Z187100 not classified & original description: pacid=50597131... 0.06 OrthoFinder output from all 47 species
LOC_Os04g40740.1 LOC_Os04g40740 Epithiospecifier protein OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp1g22040.1 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.02 OrthoFinder output from all 47 species
Sam_g16569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g111390.4.1 Solyc03g111390 tRNA wybutosine-synthesizing protein 2/3/4... 0.04 OrthoFinder output from all 47 species
Zm00001e007777_P003 Zm00001e007777 Acyl-CoA-binding domain-containing protein 4... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006652 Kelch_1 237 290
IPR025183 DUF4110 565 662
No external refs found!