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  5. Azfi_s0177.g056145

Azfi_s0177.g056145


Description : not classified & original description: CDS=1-1962


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0177.g056145
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Adi_g060042 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G014000.1 Ceric.22G014000 not classified & original description: pacid=50615208... 0.07 OrthoFinder output from all 47 species
Dcu_g11618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09638 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 OrthoFinder output from all 47 species
LOC_Os02g42210.1 LOC_Os02g42210 Pentatricopeptide repeat-containing protein At4g36680,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.02 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.02 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.02 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.02 OrthoFinder output from all 47 species
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012950 No alias not classified & original description: CDS=1-1968 0.05 OrthoFinder output from all 47 species
Solyc02g062910.3.1 Solyc02g062910 Pentatricopeptide repeat-containing protein At4g36680,... 0.03 OrthoFinder output from all 47 species
Solyc02g079830.1.1 Solyc02g079830 Pentatricopeptide repeat-containing protein At3g13160,... 0.03 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.04 OrthoFinder output from all 47 species
Tin_g08209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.03 OrthoFinder output from all 47 species
Zm00001e028938_P001 Zm00001e028938 Pentatricopeptide repeat-containing protein At1g55890,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 267 296
IPR002885 Pentatricopeptide_repeat 168 194
IPR002885 Pentatricopeptide_repeat 448 475
IPR002885 Pentatricopeptide_repeat 240 264
IPR002885 Pentatricopeptide_repeat 554 583
IPR002885 Pentatricopeptide_repeat 380 421
IPR002885 Pentatricopeptide_repeat 480 529
IPR002885 Pentatricopeptide_repeat 304 352
No external refs found!