Azfi_s0176.g056031 (TOP1BETA, TOP1)


Aliases : TOP1BETA, TOP1

Description : DNA topoisomerase *(TOP1) & original description: CDS=260-4141


Gene families : OG0002461 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002461_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0176.g056031
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Aob_g13391 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g41324 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G062200.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G051300.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.31G042500.1 TOP1BETA, TOP1,... DNA topoisomerase *(TOP1) & original description:... 0.03 OrthoFinder output from all 47 species
Mp6g05370.1 TOP1BETA, TOP1 DNA topoisomerase (TOP1) 0.02 OrthoFinder output from all 47 species
Msp_g35484 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05911 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11791 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16376 No alias DNA topoisomerase *(TOP1) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g049720.4.1 MGO1, TOP1,... DNA topoisomerase (TOP1) 0.03 OrthoFinder output from all 47 species
Spa_g18323 TOP1BETA, TOP1 DNA topoisomerase *(TOP1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR013500 TopoI_cat_euk 982 1189
IPR025834 TopoI_C_dom 1225 1293
IPR008336 TopoI_DNA-bd_euk 768 979
No external refs found!