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  5. Azfi_s0154.g053563

Azfi_s0154.g053563 (RAT5, HTA1, ATHTA1)


Aliases : RAT5, HTA1, ATHTA1

Description : histone *(H2A) & original description: CDS=1-702


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0154.g053563
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00168p00048800 HTA12,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
AT5G54640 RAT5, HTA1, ATHTA1 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g26221 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05288 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene48036.t1 HTA7, Aspi01Gene48036 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g06100 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g39386 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12273 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19076 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g21750.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Ore_g07187 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08324 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10950 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 93 197
IPR032454 Histone_H2A_C 200 233
No external refs found!