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  5. Azfi_s0132.g049198

Azfi_s0132.g049198 (RAD4, ATRAD4)


Aliases : RAD4, ATRAD4

Description : DNA repair protein *(XPC) & original description: CDS=51-3317


Gene families : OG0004861 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0132.g049198
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00163020 RAD4, ATRAD4,... DNA damage response.DNA repair mechanisms.nucleotide... 0.02 OrthoFinder output from all 47 species
Cba_g13496 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10343 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_25624 RAD4, ATRAD4 DNA repair protein (XPC) 0.03 OrthoFinder output from all 47 species
LOC_Os08g33082.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.04 OrthoFinder output from all 47 species
Ore_g33184 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g32348 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc11g011150.2.1 RAD4, ATRAD4,... DNA repair protein (XPC) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR018328 Rad4_beta-hairpin_dom3 908 980
IPR018325 Rad4/PNGase_transGLS-fold 608 669
IPR002931 Transglutaminase-like 299 365
IPR018327 BHD_2 836 901
IPR018326 Rad4_beta-hairpin_dom1 783 832
No external refs found!