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  5. Azfi_s0132.g049182

Azfi_s0132.g049182 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : not classified & original description: CDS=249-659


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0132.g049182
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00227790 NFD2, HMG BETA... HMG1/2-like protein OS=Vicia faba 0.04 OrthoFinder output from all 47 species
AT2G17560 NFD4, HMGB4, NFD04 high mobility group B4 0.04 OrthoFinder output from all 47 species
AT5G23420 HMGB6 high-mobility group box 6 0.03 OrthoFinder output from all 47 species
Adi_g007317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Adi_g012117 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g018094 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Adi_g080941 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Adi_g080942 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g13137 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g48668 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene44588.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.06 OrthoFinder output from all 47 species
Cba_g24481 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000073.45 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.29 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g07597 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dac_g07598 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dac_g12415 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Dac_g19456 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dac_g31445 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44453 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Gb_05796 NFD2, HMG BETA... High mobility group B protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_41194 NFD03, HMGB3, NFD3 HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 81.6) 0.02 OrthoFinder output from all 47 species
Len_g16826 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05840 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g32302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g01263 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Msp_g35147 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Msp_g38531 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pir_g56637 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22709 NFD2, HMG BETA... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g27344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37720 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Solyc08g082070.3.1 Solyc08g082070 High mobility group B protein 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g20871 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g03032 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 50 76
No external refs found!