Aliases : PKL, GYM, CHR6, SSL2, CHD3
Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: CDS=441-4970
Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00071p00058700 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00086p00165640 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00090p00148990 | SYD, CHR3,... | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
AT2G25170 | PKL, GYM, CHR6,... | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | OrthoFinder output from all 47 species | |
AT3G06010 | ATCHR12 | Homeotic gene regulator | 0.05 | OrthoFinder output from all 47 species | |
AT5G19310 | No alias | Homeotic gene regulator | 0.02 | OrthoFinder output from all 47 species | |
AT5G44800 | PKR1, CHR4 | chromatin remodeling 4 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g104730 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g04898 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g09087 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aev_g26211 | No alias | chromatin remodeling factor *(ALC1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g02726 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g11507 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g17670 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g27421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g36219 | ATCHR12 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g05142 | PKL, GYM, CHR6,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Als_g16533 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Als_g22693 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
Als_g56902 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
Als_g59182 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g18378 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g29989 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g13768 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g20304 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aop_g59472 | SYD, CHR3 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Aspi01Gene16597.t1 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene24029.t1 | CHR5, Aspi01Gene24029 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Cba_g02115 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g33620 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.10G020300.1 | CHR5, Ceric.10G020300 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.1Z205000.1 | PKR1, CHR4,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G081900.1 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.36G015700.1 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.37G008600.1 | SYD, CHR3,... | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000128.11 | CHR17 | ISWI chromatin-remodeling complex ATPase CHR17... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000217.24 | SYD, CHR3 | Chromatin structure-remodeling complex protein SYD... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000217.25 | SYD, CHR3 | Chromatin structure-remodeling complex protein SYD... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000350.9 | PKR2 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000802.67 | ATCHR12 | Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000983.26 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020848.66 | No alias | Probable helicase CHR10 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020960.24 | CHR5 | Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021623.13 | PKL, GYM, CHR6,... | RNA biosynthesis.transcriptional activation.PHD finger... | 0.02 | OrthoFinder output from all 47 species | |
Cre03.g179300 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.01 | OrthoFinder output from all 47 species | |
Cre08.g377200 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
Cre12.g508150 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g06908 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g13958 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g02069 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.07 | OrthoFinder output from all 47 species | |
Dcu_g03216 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g07767 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g19159 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g38948 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g42511 | PKL, GYM, CHR6,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Dde_g03505 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g09078 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g09827 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g10042 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01012117001 | PKR1, CHR4 | RNA biosynthesis.transcriptional activation.PHD finger... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01017791001 | CHR17 | Chromatin organisation.chromatin remodeling... | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01017921001 | ATCHR12 | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01035901001 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01037235001 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.05 | OrthoFinder output from all 47 species | |
Gb_27153 | ATCHR12 | chromatin remodeling factor (Snf2) | 0.03 | OrthoFinder output from all 47 species | |
Gb_35181 | CHR5 | chromatin remodeling factor (Chd1). component CHR5 of... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os06g08480.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os07g46590.1 | CHR5, LOC_Os07g46590 | chromatin remodeling factor (Chd1). component CHR5 of... | 0.03 | OrthoFinder output from all 47 species | |
Len_g01407 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
Len_g08675 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
Len_g11421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Len_g29294 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
Len_g57697 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g02374 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g04300 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g06769 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g16058 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
MA_8926002g0010 | SYD, CHR3 | Chromatin structure-remodeling complex protein SYD... | 0.03 | OrthoFinder output from all 47 species | |
Mp2g26680.1 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g00040.1 | PKR1, CHR4 | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | OrthoFinder output from all 47 species | |
Mp5g24460.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | OrthoFinder output from all 47 species | |
Mp8g17660.1 | ATCHR12 | chromatin remodeling factor (Snf2) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g13206 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g13222 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g14786 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Msp_g15707 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g03161 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g10938 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g12701 | CHR11 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ore_g12901 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g18340 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g16211 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g16726 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g05325 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g13843 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g16735 | No alias | chromatin remodeling factor *(ALC1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g17918 | CHR01, CHR1,... | chromatin remodeling factor *(DDM1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0046.g013333 | PKL, GYM, CHR6,... | not classified & original description: CDS=412-5028 | 0.04 | OrthoFinder output from all 47 species | |
Sam_g14615 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g17473 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g29220 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g49524 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Sam_g50500 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.03 | OrthoFinder output from all 47 species | |
Smo102849 | ATCHR12 | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
Smo155996 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
Smo440203 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.04 | OrthoFinder output from all 47 species | |
Smo440815 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g067390.4.1 | CHR11, Solyc01g067390 | chromatin remodeling factor (Iswi) | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g068560.3.1 | PKR1, CHR4,... | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | OrthoFinder output from all 47 species | |
Solyc06g065730.3.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g062010.3.1 | SYD, CHR3, Solyc11g062010 | chromatin remodeling factor (Snf2) | 0.03 | OrthoFinder output from all 47 species | |
Spa_g12616 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g17788 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Spa_g21765 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g30961 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g14271 | PKL, GYM, CHR6,... | CHD3-type chromaTin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g28925 | PKR1, CHR4 | CHD3-type chromaTin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e026331_P001 | CHR17, Zm00001e026331 | chromatin remodeling factor (Iswi) | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e030969_P003 | SYD, CHR3, Zm00001e030969 | chromatin remodeling factor (Snf2) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e040406_P002 | ATCHR12, Zm00001e040406 | chromatin remodeling factor (Snf2) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006338 | chromatin remodeling | IEA | Interproscan |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004363 | glutathione synthase activity | IEP | HCCA |
MF | GO:0004559 | alpha-mannosidase activity | IEP | HCCA |
MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005875 | microtubule associated complex | IEP | HCCA |
BP | GO:0006749 | glutathione metabolic process | IEP | HCCA |
BP | GO:0006750 | glutathione biosynthetic process | IEP | HCCA |
MF | GO:0015923 | mannosidase activity | IEP | HCCA |
MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
BP | GO:0019184 | nonribosomal peptide biosynthetic process | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
CC | GO:0030286 | dynein complex | IEP | HCCA |
MF | GO:0033218 | amide binding | IEP | HCCA |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | HCCA |
BP | GO:0044272 | sulfur compound biosynthetic process | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0120227 | acyl-CoA binding | IEP | HCCA |
MF | GO:1901567 | fatty acid derivative binding | IEP | HCCA |
MF | GO:1904091 | non-ribosomal peptide synthetase activity | IEP | HCCA |
No external refs found! |