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  5. Azfi_s0126.g048647

Azfi_s0126.g048647 (At-RS41, RS41, ATRSP41)


Aliases : At-RS41, RS41, ATRSP41

Description : RNA splicing factor *(RS31/40/41) & original description: CDS=1-669


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0126.g048647

Target Alias Description ECC score Gene Family Method Actions
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g006284 At-RS31a, RS31a RNA splicing factor *(RS31/40/41) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079901 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g42675 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000852.9 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Cre16.g674250 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Mp8g04570.1 At-RS41, RS41, ATRSP41 RS31/40/41 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Solyc01g091750.3.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Solyc10g009330.3.1 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc11g072340.2.1 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g04287 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04288 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e013507_P001 At-RS41, RS41,... RS31/40/41 RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 98 160
IPR000504 RRM_dom 28 59
No external refs found!