Solyc08g079180.3.1 (Solyc08g079180.3)


Aliases : Solyc08g079180.3

Description : 29.2.4 protein.synthesis.elongation Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. SNOWY COTYLEDON 1 (SCO1)


Gene families : OG_01_0001639 (Gene family) Phylogenetic Tree(s): OG0001639_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc08g079180.3.1
Cluster HCCA cluster: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Cre02.g076250 No alias 29.2.4 protein.synthesis.elongation Nuclear encoded... 0.01 Gene family
GSVIVT01006035001 No alias 29.2.4 protein.synthesis.elongation Nuclear encoded... 0.02 Gene family
LOC_Os04g45490 Os04g0538100,... 29.2.4 protein.synthesis.elongation Nuclear encoded... 0.04 Gene family
Smo143627 PACid_15417020 No description available 0.02 Gene family
Zm00001d002822 GRMZM5G810061 29.2.4 protein.synthesis.elongation Nuclear encoded... 0.03 Gene family
Zm00001d025948 GRMZM2G123719 29.2.4 protein.synthesis.elongation Nuclear encoded... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000640 EFG_V-like 690 777
IPR000795 TF_GTP-bd_dom 99 371
IPR004161 EFTu-like_2 414 480
IPR005517 Transl_elong_EFG/EF2_IV 569 687
No external refs found!