- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : ATHM4, TRX-M4, ATM4
Description : thioredoxin *(TRX-M) & original description: CDS=236-865
Gene families : OG0001012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001012_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00016000 | ATHM2,... | Redox homeostasis.chloroplast redox homeostasis.M-type... | 0.05 | OrthoFinder output from all 47 species | |
| AT1G03680 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin M-type 1 | 0.05 | OrthoFinder output from all 47 species | |
| AT3G15360 | ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g086491 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g107265 | ATHM4, TRX-M4, ATM4 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g32022 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g46561 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g09870 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g12040 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Als_g21943 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g48830 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g58971 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g04875 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Aob_g08794 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g24176 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g39548 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aop_g11048 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene35886.t2 | ATHM2, Aspi01Gene35886 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19197 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g23725 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.16G010700.1 | ATHM4, TRX-M4,... | thioredoxin *(TRX-M) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.23G041700.1 | ATHM2, Ceric.23G041700 | thioredoxin *(TRX-M) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.30G036000.1 | ATHM1, THM1,... | thioredoxin *(TRX-M) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001477.10 | ATHM4, TRX-M4, ATM4 | Redox homeostasis.chloroplast redox homeostasis.X-type... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020563.189 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g01349 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g14399 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g21277 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g02608 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Dde_g17327 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g23261 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03185 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g08153 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01014360001 | ATHM4, TRX-M4, ATM4 | Redox homeostasis.chloroplast redox homeostasis.M-type... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_31181 | ATHM2 | M-type thioredoxin | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os12g08730.1 | ATHM2, LOC_Os12g08730 | M-type thioredoxin | 0.04 | OrthoFinder output from all 47 species | |
| Len_g07374 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Len_g09823 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Len_g16078 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.11 | OrthoFinder output from all 47 species | |
| MA_474303g0010 | ATHM2 | M-type thioredoxin | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g18950.1 | ATHM1, THM1, TRX-M1, ATM1 | M-type thioredoxin | 0.08 | OrthoFinder output from all 47 species | |
| Msp_g01870 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g12620 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g06481 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g10092 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g28088 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g10112 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Pp3c25_2880V3.1 | ATHM1, THM1,... | thioredoxin M-type 1 | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g02691 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Ppi_g22064 | ATHM4, TRX-M4, ATM4 | thioredoxin *(TRX-M) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g07636 | No alias | thioredoxin *(TRX-M) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g24018 | No alias | thioredoxin *(TRX-M) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Solyc07g063190.3.1 | ATHM4, TRX-M4,... | M-type thioredoxin | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g013810.2.1 | ATHM4, TRX-M4,... | M-type thioredoxin | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g06833 | ATHM2 | thioredoxin *(TRX-M) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g14111 | ATHM1, THM1, TRX-M1, ATM1 | thioredoxin *(TRX-M) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e018385_P001 | ATHM4, TRX-M4,... | M-type thioredoxin | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e039586_P001 | ATHM2, Zm00001e039586 | M-type thioredoxin | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| MF | GO:0008235 | metalloexopeptidase activity | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0009512 | cytochrome b6f complex | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0070006 | metalloaminopeptidase activity | IEP | HCCA |
| CC | GO:0070069 | cytochrome complex | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013766 | Thioredoxin_domain | 186 | 285 |
| No external refs found! |