Azfi_s0092.g043117 (IMP4)

Aliases : IMP4

Description : SSU processome assembly factor *(IMP4) & original description: CDS=83-964

Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0092.g043117
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020848.22	IMP4	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01000834001	IMP4	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Mp2g04740.1	IMP4	SSU processome assembly factor (IMP4)	0.06	OrthoFinder output from all 47 species
Sam_g06574	No alias	SSU processome assembly factor *(IMP4) & original...	0.03	OrthoFinder output from all 47 species
Solyc01g007250.4.1	IMP4, Solyc01g007250	SSU processome assembly factor (IMP4)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	117	289

External Links

No external refs found!