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  5. Azfi_s0082.g038704

Azfi_s0082.g038704


Description : not classified & original description: CDS=1-2661


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0082.g038704
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00062590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g069066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60846 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g09044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09077 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28220 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28676 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16820 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g18085 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0011.g012490 No alias not classified & original description: CDS=1-2382 0.05 OrthoFinder output from all 47 species
Azfi_s0054.g033567 EMB2758 not classified & original description: CDS=1-2352 0.05 OrthoFinder output from all 47 species
Azfi_s0262.g060819 REME1 not classified & original description: CDS=1-1380 0.03 OrthoFinder output from all 47 species
Cba_g24774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.30G071100.1 Ceric.30G071100 not classified & original description: pacid=50608720... 0.03 OrthoFinder output from all 47 species
Ceric.39G045800.1 VAC1, ECB2,... not classified & original description: pacid=50583112... 0.03 OrthoFinder output from all 47 species
Dac_g18283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g21976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24892 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28766 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g43504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17291 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21670 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46554 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50249 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50757 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g51448 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Len_g04340 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g04832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g35606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_370961g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.04 OrthoFinder output from all 47 species
Msp_g03182 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g04519 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15576 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g15850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g20531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24078 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26112 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31404 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g38509 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48107 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06220 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15159 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20508 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g34869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17865 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25064 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04622 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g43466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62239 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004399 No alias not classified & original description: CDS=167-2908 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025493 No alias not classified & original description: CDS=1-2751 0.03 OrthoFinder output from all 47 species
Sam_g13748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g100340.4.1 Solyc01g100340 Pentatricopeptide repeat-containing protein At1g09190... 0.04 OrthoFinder output from all 47 species
Spa_g02585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12511 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g14597 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18774 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g19369 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22005 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23547 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26431 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g30672 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45053 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52254 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55591 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24133 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g43995 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005246_P001 Zm00001e005246 Pentatricopeptide repeat-containing protein At2g41080... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 382 404
IPR002885 Pentatricopeptide_repeat 690 712
IPR002885 Pentatricopeptide_repeat 280 304
IPR002885 Pentatricopeptide_repeat 178 200
IPR002885 Pentatricopeptide_repeat 716 762
IPR002885 Pentatricopeptide_repeat 408 454
IPR002885 Pentatricopeptide_repeat 305 353
IPR002885 Pentatricopeptide_repeat 614 661
IPR002885 Pentatricopeptide_repeat 101 149
IPR002885 Pentatricopeptide_repeat 204 250
IPR002885 Pentatricopeptide_repeat 512 560
No external refs found!