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  5. Azfi_s0081.g038579

Azfi_s0081.g038579 (MLH1, ATMLH1)


Aliases : MLH1, ATMLH1

Description : component *(MLH1) of MLH1-PMS1 heterodimer & original description: CDS=42-2297


Gene families : OG0003563 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0081.g038579
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Als_g22684 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z069400.1 MLH1, ATMLH1,... component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
LOC_Os01g72880.1 MLH1, ATMLH1,... component MLH1 of MLH1-PMS1 heterodimer 0.05 OrthoFinder output from all 47 species
Solyc04g045660.4.1 MLH1, ATMLH1,... component MLH1 of MLH1-PMS1 heterodimer 0.03 OrthoFinder output from all 47 species
Spa_g07235 MLH1, ATMLH1 component *(MLH1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0106073 dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR032189 Mlh1_C 481 764
IPR013507 DNA_mismatch_S5_2-like 242 363
No external refs found!