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  5. Azfi_s0066.g036110

Azfi_s0066.g036110 (ATPRP40C, PRP40C)


Aliases : ATPRP40C, PRP40C

Description : pre-mRNA-processing protein *(PRP40C) & original description: CDS=1-2952


Gene families : OG0006310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0066.g036110

Target Alias Description ECC score Gene Family Method Actions
Aob_g04487 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Dac_g07036 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01010209001 ATPRP40C, PRP40C RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
LOC_Os10g34380.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.02 OrthoFinder output from all 47 species
Mp5g09830.1 ATPRP40C, PRP40C pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Ore_g35746 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.02 OrthoFinder output from all 47 species
Pir_g11410 ATPRP40C, PRP40C pre-mRNA-processing protein *(PRP40C) & original... 0.04 OrthoFinder output from all 47 species
Solyc04g008700.3.1 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.03 OrthoFinder output from all 47 species
Zm00001e012643_P002 ATPRP40C,... pre-mRNA-processing protein (PRP40C) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 395 420
IPR002713 FF_domain 726 770
IPR002713 FF_domain 589 635
IPR002713 FF_domain 825 876
No external refs found!