Azfi_s0065.g035921


Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: CDS=1-624


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0065.g035921

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00089340 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
AT5G14320 No alias Ribosomal protein S13/S18 family 0.16 OrthoFinder output from all 47 species
Adi_g042167 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g04341 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ala_g00666 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Als_g09424 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g00300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g40481 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cba_g08263 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g34822 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.05G059300.1 Ceric.05G059300 component *(uS13c) of small plastid ribosomal-subunit... 0.17 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.13 OrthoFinder output from all 47 species
Dac_g26723 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g44492 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g00682 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.08 OrthoFinder output from all 47 species
LOC_Os03g49710.1 LOC_Os03g49710 component mtRPS13|psRPS13 of small ribosomal subunit... 0.12 OrthoFinder output from all 47 species
Len_g05067 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Lfl_g00631 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.19 OrthoFinder output from all 47 species
Msp_g02627 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Nbi_g15772 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g09656 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g35705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pnu_g13107 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ppi_g02591 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Sam_g47748 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.09 OrthoFinder output from all 47 species
Spa_g00577 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g04300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008235 metalloexopeptidase activity IEP HCCA
CC GO:0009512 cytochrome b6f complex IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
MF GO:0070006 metalloaminopeptidase activity IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 83 191
No external refs found!