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  5. Azfi_s0049.g030788

Azfi_s0049.g030788


Description : linker histone *(H1) & original description: CDS=1-786


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0049.g030788
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.11 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.07 OrthoFinder output from all 47 species
Dde_g23302 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01000755001 No alias Chromatin organisation.histones.H1 linker histone 0.05 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.08 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Len_g09311 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27513 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Msp_g12026 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25816 No alias linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 2 65
No external refs found!