1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0046.g030221

Azfi_s0046.g030221


Description : component *(uS12) of small ribosomal-subunit (SSU) proteome & original description: CDS=1-573


Gene families : OG0002074 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002074_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0046.g030221
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dde_g04702 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
LOC_Os01g61814.1 LOC_Os01g61814 component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g60400.1 LOC_Os03g60400 component RPS23 of SSU proteome 0.05 OrthoFinder output from all 47 species
MA_19871g0020 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_9043057g0010 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g40932 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c4_3120V3.1 Pp3c4_3120 Ribosomal protein S12/S23 family protein 0.01 OrthoFinder output from all 47 species
Tin_g26329 No alias component *(uS12) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006170_P001 Zm00001e006170 component RPS23 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e027265_P001 Zm00001e027265 component RPS23 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 78 189
No external refs found!