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  5. Azfi_s0045.g029762

Azfi_s0045.g029762


Description : component *(Sm-D2) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex & original description: CDS=1-603


Gene families : OG0003421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0045.g029762

Target Alias Description ECC score Gene Family Method Actions
Als_g20203 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Azfi_s0108.g045256 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Dcu_g45622 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Gb_19475 No alias component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Msp_g40255 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder output from all 47 species
Pp3c12_17690V3.1 Pp3c12_17690 Small nuclear ribonucleoprotein family protein 0.02 OrthoFinder output from all 47 species
Sam_g08212 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Spa_g22292 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
Tin_g15303 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Zm00001e007570_P002 Zm00001e007570 component Sm-D2 of U1/U2/U4/U5-associated Sm accessory... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008193 tRNA guanylyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 114 157
No external refs found!