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  5. Azfi_s0042.g026935

Azfi_s0042.g026935


Description : not classified & original description: CDS=339-5477


Gene families : OG0002960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0042.g026935
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Als_g18903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G028800.1 Ceric.02G028800 not classified & original description: pacid=50585664... 0.03 OrthoFinder output from all 47 species
MA_9624g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g47722 No alias component *(LUG/LUH) of transcriptional co-repressor... 0.03 OrthoFinder output from all 47 species
Smo173767 No alias Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e022965_P001 Zm00001e022965 Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 103 226
IPR002083 MATH/TRAF_dom 599 710
IPR002083 MATH/TRAF_dom 458 555
No external refs found!