- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : not classified & original description: CDS=1-1119
Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0035.g025723 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G80780 | No alias | Polynucleotidyl transferase, ribonuclease H-like... | 0.02 | OrthoFinder output from all 47 species | |
| AT5G10960 | No alias | Polynucleotidyl transferase, ribonuclease H-like... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g024363 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0356.g066782 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03366 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os08g34170.1 | LOC_Os08g34170 | Probable CCR4-associated factor 1 homolog 7... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g05220 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.04 | OrthoFinder output from all 47 species | |
| MA_9777560g0010 | No alias | Probable CCR4-associated factor 1 homolog 7... | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g01530.1 | No alias | Probable CCR4-associated factor 1 homolog 6... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g02703 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04394 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g16322 | No alias | deadenylase component *(CAF1) of mRNA deadenylation... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006941 | RNase_CAF1 | 15 | 241 |
| No external refs found! |