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  5. Azfi_s0035.g025646

Azfi_s0035.g025646 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : component *(PRPF6) of U5 snRNP complex & original description: CDS=1-3249


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0035.g025646

Target Alias Description ECC score Gene Family Method Actions
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g14994 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Gb_39445 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Zm00001e018293_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 63
IPR010491 PRP1_N 149 322
No external refs found!