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  5. Azfi_s0032.g024877

Azfi_s0032.g024877 (RPAC43, ATRPAC43)


Aliases : RPAC43, ATRPAC43

Description : not classified & original description: CDS=126-1121


Gene families : OG0005805 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005805_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0032.g024877
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g18410.1 RPAC43,... DNA-directed RNA polymerases II, IV and V subunit 3... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004730 pseudouridylate synthase activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 109 254
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 79 323
No external refs found!