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  5. Azfi_s0027.g023708

Azfi_s0027.g023708 (HEN2)


Aliases : HEN2

Description : RNA helicase component *(HEN2) of Nuclear Exosome Targeting (NEXT) activation complex & original description: CDS=365-1858


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0027.g023708
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.05 OrthoFinder output from all 47 species
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.07 OrthoFinder output from all 47 species
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
Adi_g017341 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 OrthoFinder output from all 47 species
Aev_g17654 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Ala_g07168 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ala_g07737 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ala_g07801 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aob_g12480 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Cba_g07746 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.07 OrthoFinder output from all 47 species
Ceric.15G051600.1 Ceric.15G051600 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.17G002800.1 Ceric.17G002800 RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.2 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
Cre06.g289950 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.08 OrthoFinder output from all 47 species
Len_g20478 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Len_g58854 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Lfl_g02277 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Lfl_g02309 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Lfl_g38626 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Msp_g15177 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Msp_g19222 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.05 OrthoFinder output from all 47 species
Ore_g17493 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.02 OrthoFinder output from all 47 species
Pp3c14_23340V3.1 Pp3c14_23340 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 OrthoFinder output from all 47 species
Ppi_g12955 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004709 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.05 OrthoFinder output from all 47 species
Sam_g14012 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Solyc12g017860.3.1 HEN2, Solyc12g017860 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Tin_g04756 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Tin_g11923 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species
Zm00001e036710_P004 Zm00001e036710 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 117 383
IPR012961 Ski2/MTR4_C 410 578
IPR011545 DEAD/DEAH_box_helicase_dom 128 274
No external refs found!