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  5. Azfi_s0027.g023695

Azfi_s0027.g023695 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: CDS=291-701


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0027.g023695

Target Alias Description ECC score Gene Family Method Actions
AT5G54640 RAT5, HTA1, ATHTA1 Histone superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g07168 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00233.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40787.t1 HTA6, Aspi01Gene40787 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12240 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10425800g0010 HTA7 histone (H2A) 0.03 OrthoFinder output from all 47 species
Pnu_g28142 HTA2 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c5_1791V3.1 HTA10, Pp3c5_1791 histone H2A 10 0.02 OrthoFinder output from all 47 species
Pp3c5_1800V3.1 HTA10, Pp3c5_1800 histone H2A 10 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 91 125
IPR007125 Histone_H2A/H2B/H3 9 88
No external refs found!