1. Home
  2. Species
  3. Azolla filiculoides
  4. Sequence
  5. Azfi_s0015.g014037

Azfi_s0015.g014037 (MSH7, ATMSH7, MSH6-2)


Aliases : MSH7, ATMSH7, MSH6-2

Description : component *(MSH7) of MSH2-x mismatch repair heterodimers & original description: CDS=119-3298


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0015.g014037
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00242090 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
AMTR_s00022p00172100 MSH7, ATMSH7,... DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00078p00191830 MSH7, ATMSH7,... DNA damage response.DNA repair mechanisms.mismatch... 0.06 OrthoFinder output from all 47 species
AT3G24495 MSH7, ATMSH7, MSH6-2 MUTS homolog 7 0.11 OrthoFinder output from all 47 species
Cre05.g235750 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Dcu_g46455 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
GSVIVT01015407001 MSH7, ATMSH7, MSH6-2 DNA damage response.DNA repair mechanisms.mismatch... 0.08 OrthoFinder output from all 47 species
Gb_18995 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g08540.1 MSH7, ATMSH7,... component MSH7 of MSH2-x mismatch repair heterodimers 0.07 OrthoFinder output from all 47 species
LOC_Os09g24220.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.06 OrthoFinder output from all 47 species
MA_214705g0010 MSH7, ATMSH7, MSH6-2 DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g14640.1 MSH6-1, ATMSH6, MSH6 component MSH6 of MSH2-x mismatch repair heterodimers 0.03 OrthoFinder output from all 47 species
Mp7g16850.1 MSH7, ATMSH7, MSH6-2 component MSH7 of MSH2-x mismatch repair heterodimers 0.1 OrthoFinder output from all 47 species
Nbi_g08811 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.04 OrthoFinder output from all 47 species
Sam_g16226 No alias component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
Solyc01g079520.3.1 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.13 OrthoFinder output from all 47 species
Tin_g08443 MSH7, ATMSH7, MSH6-2 component *(MSH7) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species
Zm00001e016678_P004 MSH7, ATMSH7,... component MSH7 of MSH2-x mismatch repair heterodimers 0.11 OrthoFinder output from all 47 species
Zm00001e034087_P001 MSH6-1, ATMSH6,... component MSH6 of MSH2-x mismatch repair heterodimers 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 795 989
IPR007860 DNA_mmatch_repair_MutS_con_dom 359 435
IPR007695 DNA_mismatch_repair_MutS-lik_N 217 329
IPR007696 DNA_mismatch_repair_MutS_core 522 731
No external refs found!