Azfi_s0015.g013846 (UBP13)

Aliases : UBP13

Description : deubiquitinase *(UBP12-13) & original description: CDS=177-3623

Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0015.g013846

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	UBP13,...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Als_g05134	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g20270	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.24G037500.1	UBP12, Ceric.24G037500	deubiquitinase *(UBP12-13) & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021350.29	UBP13	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g08947	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g46962	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022498001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01034603001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01037528001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
LOC_Os07g06950.1	UBP12, LOC_Os07g06950	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
LOC_Os11g36470.1	UBP13, LOC_Os11g36470	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
LOC_Os12g30540.1	UBP12, LOC_Os12g30540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
MA_10427483g0020	UBP13	deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Msp_g15171	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g16929	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001264	UBP13	deubiquitinase *(UBP12-13) & original description: CDS=100-3450	0.03	OrthoFinder output from all 47 species
Smo444302	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
Solyc11g071700.2.1	UBP12, Solyc11g071700	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	OrthoFinder output from all 47 species
Zm00001e019687_P003	UBP13, Zm00001e019687	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Zm00001e032871_P004	UBP12, Zm00001e032871	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024729	USP7_ICP0-binding_dom	709	962
IPR002083	MATH/TRAF_dom	119	252
IPR029346	USP_C	972	1184
IPR001394	Peptidase_C19_UCH	270	605

External Links

No external refs found!

Azfi_s0015.g013846 (UBP13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation