Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1
Description : basal Sigma-type transcription factor & original description: CDS=322-1881
Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00072720 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00011p00258380 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00011p00266100 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00025p00248060 | SIGD, SIG4,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
AT1G64860 | SIGB, SIG2,... | sigma factor A | 0.03 | OrthoFinder output from all 47 species | |
AT2G36990 | SIGF, SIG6,... | RNApolymerase sigma-subunit F | 0.03 | OrthoFinder output from all 47 species | |
Als_g61402 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G083900.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Dde_g23470 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g05906 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019326001 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01025717001 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01035330001 | SIGC, SIG3 | RNA biosynthesis.organelle... | 0.05 | OrthoFinder output from all 47 species | |
Gb_05479 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.05 | OrthoFinder output from all 47 species | |
Gb_05480 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g16430.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os05g51150.1 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os08g14450.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os11g26160.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
MA_10429585g0010 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Mp4g13380.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g15030.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g21262 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g08024 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g06448 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g07492 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0161.g023922 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g13485 | No alias | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Smo117159 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.02 | OrthoFinder output from all 47 species | |
Solyc01g081490.3.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g097320.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e001198_P005 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e021420_P001 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e021683_P001 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e032586_P001 | SIGC, SIG3,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006553 | lysine metabolic process | IEP | HCCA |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009085 | lysine biosynthetic process | IEP | HCCA |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | HCCA |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | HCCA |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | HCCA |
No external refs found! |