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  5. Azfi_s0011.g012766

Azfi_s0011.g012766 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: CDS=1-1848


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0011.g012766
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT5G48150 PAT1 GRAS family transcription factor 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010718 PAT1 GRAS-type transcription factor & original description: CDS=1-1851 0.04 OrthoFinder output from all 47 species
LOC_Os01g65900.1 SCL1, LOC_Os01g65900 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc04g064550.1.1 SCL1, Solyc04g064550 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Solyc05g054170.4.1 SCL13, Solyc05g054170 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Spa_g07387 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 245 614
No external refs found!