Azfi_s0008.g011658 (SNL4)

Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: CDS=831-4673

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Azfi_s0008.g011658
Cluster	HCCA: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
AT3G01320	SNL1	SIN3-like 1	0.04	OrthoFinder output from all 47 species
AT5G15020	SNL2	SIN3-like 2	0.04	OrthoFinder output from all 47 species
Adi_g013447	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Adi_g103364	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g21851	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Als_g22302	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Als_g52097	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Als_g52098	SNL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g00817	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Cba_g06817	SNL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g18942	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Dde_g18720	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.06	OrthoFinder output from all 47 species
Ehy_g10035	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Ehy_g10036	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
GSVIVT01032579001	SNL2	Chromatin organisation.histone modifications.histone...	0.04	OrthoFinder output from all 47 species
Gb_35988	SNL4	component SNL of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species
LOC_Os05g01020.2	SNL4, LOC_Os05g01020	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species
Len_g04844	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Lfl_g03500	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ore_g28709	SNL4	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g30140	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ore_g30141	SNL2	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Ppi_g01419	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Ppi_g09115	SNL4	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g14557	No alias	component *(SNL) of histone deacetylase machineries &...	0.03	OrthoFinder output from all 47 species
Sam_g25571	No alias	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Smo440352	SNL4	Chromatin organisation.histone modifications.histone...	0.03	OrthoFinder output from all 47 species
Solyc02g087360.4.1	SNL2, Solyc02g087360	component SNL of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species
Solyc05g006540.3.1	SNL3, ATSIN3,...	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Spa_g15712	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Tin_g13041	SNL4	component *(SNL) of histone deacetylase machineries &...	0.04	OrthoFinder output from all 47 species
Tin_g19320	SNL3, ATSIN3, SIN3	component *(SNL) of histone deacetylase machineries &...	0.05	OrthoFinder output from all 47 species
Zm00001e017111_P002	SNL4, Zm00001e017111	component SNL of histone deacetylase machineries	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	137	180
IPR003822	PAH	325	369
IPR003822	PAH	55	98
IPR013194	HDAC_interact_dom	450	542
IPR031693	Sin3_C	930	1178

External Links

No external refs found!

Azfi_s0008.g011658 (SNL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation