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  5. Azfi_s0007.g010775

Azfi_s0007.g010775


Description : not classified & original description: CDS=149-1882


Gene families : OG0008051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0007.g010775
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00223590 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G28600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 OrthoFinder output from all 47 species
Ceric.32G031900.1 Ceric.32G031900 not classified & original description: pacid=50597973... 0.03 OrthoFinder output from all 47 species
GSVIVT01034722001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_00735 No alias DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Mp4g08260.1 No alias DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Pp3c1_25970V3.1 Pp3c1_25970 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Solyc11g007610.2.1 Solyc11g007610 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006188 IMP biosynthetic process IEP HCCA
BP GO:0006189 'de novo' IMP biosynthetic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046040 IMP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 462 573
IPR011545 DEAD/DEAH_box_helicase_dom 259 409
No external refs found!