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Aliases : LINC2
Description : nuclear lamina lamin-like protein *(CRWN) & original description: CDS=463-4263
Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Azfi_s0006.g010369 | |
| Cluster | HCCA: Cluster_96 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00044p00204550 | LINC4,... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.02 | OrthoFinder output from all 47 species | |
| AT5G65780 | ATBCAT-5 | branched-chain amino acid aminotransferase 5 /... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g018491 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g29067 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g07969 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g06258 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.07G023500.1 | LINC2, Ceric.07G023500 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.31G070800.1 | LINC2, Ceric.31G070800 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g09858 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01007428001 | LINC4 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01011972001 | LINC3 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01031076001 | LINC1 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g56140.1 | LINC4, LOC_Os01g56140 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g03849 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g11685 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19679 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14580 | No alias | nuclear lamina lamin-like protein *(CRWN) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Solyc02g091960.4.1 | LINC4, Solyc02g091960 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g26205 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e019705_P002 | LINC4, Zm00001e019705 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e023357_P001 | LINC1, Zm00001e023357 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | HCCA |
| MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | HCCA |
| MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
| MF | GO:0004814 | arginine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0015923 | mannosidase activity | IEP | HCCA |
| MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0030955 | potassium ion binding | IEP | HCCA |
| MF | GO:0031420 | alkali metal ion binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |