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  5. Azfi_s0005.g009474

Azfi_s0005.g009474 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: CDS=131-538


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0005.g009474
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00197p00028970 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
AT1G51060 HTA10 histone H2A 10 0.06 OrthoFinder output from all 47 species
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.1 OrthoFinder output from all 47 species
AT5G59870 HTA6 histone H2A 6 0.04 OrthoFinder output from all 47 species
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005118 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011159 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011160 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011321 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g070713 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086789 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09182 GAMMA-H2AX,... histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g44974 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01994 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09992 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09993 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene00233.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50952 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002735001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
GSVIVT01025019001 HTA12 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_25326 GAMMA-H2AX,... histone (H2A) 0.04 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.04 OrthoFinder output from all 47 species
Len_g05493 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g21938 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10425800g0010 HTA7 histone (H2A) 0.07 OrthoFinder output from all 47 species
MA_3822944g0010 HTA2 histone (H2A) 0.01 OrthoFinder output from all 47 species
MA_94328g0020 GAMMA-H2AX,... histone (H2A) 0.05 OrthoFinder output from all 47 species
Mp3g00840.1 HTA10 histone (H2A) 0.02 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g00069 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28966 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c10_13610V3.1 GAMMA-H2AX,... gamma histone variant H2AX 0.02 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025887 GAMMA-H2AX,... histone *(H2A) & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Smo166626 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.09 OrthoFinder output from all 47 species
Smo73637 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.06 OrthoFinder output from all 47 species
Smo76653 HTA2 Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.05 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.06 OrthoFinder output from all 47 species
Solyc09g082710.3.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc10g006560.4.1 HTA10, Solyc10g006560 histone (H2A) 0.09 OrthoFinder output from all 47 species
Solyc11g073250.2.1 HTA12, Solyc11g073250 histone (H2A) 0.03 OrthoFinder output from all 47 species
Solyc12g005270.2.1 HTA10, Solyc12g005270 histone (H2A) 0.02 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005512_P001 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e010515_P001 HTA2, Zm00001e010515 histone (H2A) 0.02 OrthoFinder output from all 47 species
Zm00001e035183_P002 RAT5, HTA1,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 92 125
IPR007125 Histone_H2A/H2B/H3 9 89
No external refs found!