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  5. Azfi_s0002.g001379

Azfi_s0002.g001379 (SAMDC)


Aliases : SAMDC

Description : EC_4.1 carbon-carbon lyase & original description: CDS=1-2412


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0002.g001379
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT5G15950 No alias Adenosylmethionine decarboxylase family protein 0.05 OrthoFinder output from all 47 species
Als_g18258 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0090.g042654 SAMDC EC_4.1 carbon-carbon lyase & original description: CDS=700-2217 0.02 OrthoFinder output from all 47 species
Cba_g61764 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g71690 No alias ornithine decarboxylase & original description: none 0.03 OrthoFinder output from all 47 species
Cre03.g159500 No alias Polyamine metabolism.putrescine.synthesis.cytosolic... 0.01 OrthoFinder output from all 47 species
Cre03.g205900 SAMDC Polyamine... 0.02 OrthoFinder output from all 47 species
Ehy_g22070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24999 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g22070.1 No alias ornithine decarboxylase. S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Nbi_g14253 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13328 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00861 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041156_P001 Zm00001e041156 S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004014 adenosylmethionine decarboxylase activity IEA Interproscan
BP GO:0006597 spermine biosynthetic process IEA Interproscan
BP GO:0008295 spermidine biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0030410 nicotianamine synthase activity IEP HCCA
BP GO:0030417 nicotianamine metabolic process IEP HCCA
BP GO:0030418 nicotianamine biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0072350 tricarboxylic acid metabolic process IEP HCCA
BP GO:0072351 tricarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022644 De-COase2_N 440 672
IPR001985 S-AdoMet_decarboxylase 24 359
IPR022643 De-COase2_C 432 777
No external refs found!