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  5. Azfi_s0002.g001186

Azfi_s0002.g001186 (ATRAC11, ARAC11,...)


Aliases : ATRAC11, ARAC11, ROP1, ROP1AT, ATROP1

Description : not classified & original description: CDS=1-612


Gene families : OG0000503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0002.g001186
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Adi_g051539 ARAC3, RAC3,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g39511 ATROP4, ROP4,... small GTPase *(ROP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g48079 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29379 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g38983 ATRAC11, ARAC11,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010640 ATRAC11, ARAC11,... not classified & original description: CDS=1-750 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0167.g024188 ATRAC11, ARAC11,... small GTPase *(ROP) & original description: CDS=374-982 0.06 OrthoFinder output from all 47 species
Sam_g07595 No alias small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23832 No alias small GTPase *(ROP) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27850 No alias small GTPase *(ROP) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g03852 ARAC3, RAC3,... small GTPase *(ROP) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 39 184
No external refs found!