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  5. Azfi_s0002.g001077

Azfi_s0002.g001077


Description : component *(SF3B2) of splicing factor 3B complex & original description: CDS=256-2007


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Azfi_s0002.g001077
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248990 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g18898 No alias EC_2.7 transferase transferring phosphorus-containing... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58090.1 LOC_Os02g58090 component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Ore_g43719 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Sam_g24567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007180 DUF382 214 297
IPR006568 PSP_pro-rich 306 350
No external refs found!